BIOINFORMATICS SERVICES

MultiplexDX offers a wide range of bioinformatics services, including

  • genome assembly
  • gene expression
  • metagenomics analyses
  • data visualization
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Our skills concerning biological datasets include:

  • de novo genome (including plants) assembly and annotation (input: RNA-seq, DNA-seq)
  • differential gene expression analysis (input: RNA-seq, small RNA-seq) and the downstream network analysis
  • corrections for batch effects
  • data quality analysis
  • phylogenetics
  • predictions of protein-protein interactions
  • set up of high-quality orthogroups
  • variant (SNPs, indels) calling
  • annotation of repeats, retroviruses, and transposable element
  • analysis concerning bisulfite modification (epigenetics, 5-meC tracking)
  • correlation studies
  • combinatorics (for example, to predict the smallest set of markers to distinguish plant cultivars)
  • custom-design sets for RT-qPCR
  • basic statistics and data visualization

General skills:

  • custom made script design (bash, R, python)
  • regular expressions (Perl)
  • technical reports (latex)
  • online data visualization (R shiny)

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Bioinformatics Services

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+421 290 268 308

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FullRNAlook SAMPLE KIT

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