BIOINFORMATICS SERVICES

MultiplexDX offers a wide range of bioinformatics services, including

  • genome assembly
  • gene expression
  • metagenomics analyses
  • data visualization
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Our skills concerning biological datasets include:

  • de novo genome (including plants) assembly and annotation (input: RNA-seq, DNA-seq)
  • differential gene expression analysis (input: RNA-seq, small RNA-seq) and the downstream network analysis
  • corrections for batch effects
  • data quality analysis
  • phylogenetics
  • predictions of protein-protein interactions
  • set up of high-quality orthogroups
  • variant (SNPs, indels) calling
  • annotation of repeats, retroviruses, and transposable element
  • analysis concerning bisulfite modification (epigenetics, 5-meC tracking)
  • correlation studies
  • combinatorics (for example, to predict the smallest set of markers to distinguish plant cultivars)
  • custom-design sets for RT-qPCR
  • basic statistics and data visualization

General skills:

  • custom made script design (bash, R, python)
  • regular expressions (Perl)
  • technical reports (latex)
  • online data visualization (R shiny)

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Bioinformatics Services

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+421 290 268 308

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FullRNAlook SAMPLE KIT

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Products & Services

COVID-19 Diagnostics

The diagnostic kits vDetect and rTest are based on an improved and re-designed Charité Berlin protocol also recommended by the WHO.

Custom Oligonucleotides

We offer custom, high quality synthesis of aptamers, siRNA, miRNA, antagomirs, qPCR probes, oligonucleotide triphosphates etc.

RNA Sequencing

MDX small RNA sequencing products are compatible with Illumina sequencing technology and designed for the simplest, the most economical, the most precise and automated small RNA library preparation, enabling a great elimination of sequencing errors and biases.

Personalized Diagnostics

MultiplexDX IP-based and innovative platform merges histopathology methods, biomarker quantification, visualization and gene expression with a single-cell resolution by combining our proprietary visual and sequencing technologies into one diagnostic test.

Bioinformatics

MultiplexDX offers a wide range of bioinformatics services, including genome assembly, gene expression, metagenomics analyses and data visualization.